Gemini™ publications

Jinawath, N., Vasoontara, C., Jinawath, A., Fang, X., Zhao, K., Yap, K. L., Guo, T., Lee, C. S., Wang, W., Balgley, B. M., Davidson, B., Wang, T. L., Shih, I. M., “Oncoproteomic Analysis Reveals Co-Upregulation of RELA and STAT5 in Carboplatin Resistant Ovarian Carcinoma”, PLoS One, 5, e11198 (2010).

Fang, X., Balgley, B.M., Wang, W., Park, D.M., Lee, C.S., "Comparison of multidimensional shotgun technologies targeting tissue proteomics", Electrophoresis 23, 4063 (2009).

Fang, X., Balgley, B.M., Lee, C.S., "Recent advances in capillary electrophoresis-based proteomic techniques for biomarker discovery", Electrophoresis 23, 3998 (2009).

Lee, C.S., Balgley, B.M., "Capillary isoelectric focusing/reversed phase liquid chromatography/mass spectrometry". Methods Mol Biol. 492, 233 (2009)

Fang, X., Lee, C.S., "Proteome characterization of mouse brain mitochondria using electrospray ionization tandem mass spectrometry", Methods Enzymol. 457, 49 (2009).

Balgley, B,M,, Guo, T,, Zhao, K., Fang, X., Tavassoli, F.A., Lee, C.S., "Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues", J. Proteome Res. 8, 917 (2009).

Yan, W., Apweiler, R., Balgley, B.M., Boontheung, P., Bundy, J.L., Cargile, B.J., Cole, S., Fang, X., Gonzalez-Begne, M., Griffin, T.J., Hagen, F., Hu, S., Wolinsky, L.E., Lee, C.S., Malamud, D., Melvin, J.E., Menon, R., Mueller, M., Qiao, R., Rhodus, N.L., Sevinsky, J.R., States, D., Stephenson, J.L., Than, S., Yates, J.R., Yu, W., Xie, H., Xie, Y., Omenn, G.S., Loo, J.A., Wong, D.T., "Systematic comparison of the human saliva and plasma proteomes", Proteomics Clin. Appl. 3, 116 (2009).

Li, J., Yin, C., Okamoto, H., Balgley, B. M., Lee, C. S., Yuan, K., Ikejiri, B., Glasker, S., Vortmeyer, A. O., Oldfield, E. H., Weil, R. J., Zhuang, Z., “Identification of a Novel Proliferation-Related Protein, WHSC1 4a, in Human Gliomas”, Neuro. Oncol. 10, 45 (2008).

Balgley, B. M., Wang, W., Song, T., Fang, X., Yang, L., Lee, C. S., "Evaluation of Confidence and Reproducibility in Quantitative Proteomics Performed by Capillary Isoelectric Focusing-Based Proteome Platform Coupled with Spectral Counting Approach," Electrophoresis 29, 3047 (2008).

Fang, X., Wang, W., Yang, L., Chandrasekaran, K., Kristian, T., Balgley, B. M., Lee, C. S., "Application of Capillary Isotachophoresis-Based Multidimensional Separations Coupled with Electrospray Ionization-Tandem Mass Spectrometry for Characterization of Mouse Brain Mitochondrial Proteome," Electrophoresis 29, 2215 (2008).

Xu, H., Yang, L., Wang, W., Shi, S.-R., Liu, C., Liu, Y., Fang, X., Taylor, C. R., Lee, C. S., Balgley, B. M., "Antigen Retrieval for Proteomic Characterization of Formalin-Fixed and Paraffin-Embedded Tissues", J. Prot. Res. 7, 1098 (2008).

Fang, X., Yang, L., Wang, W., Song, T., Lee, C. S., Balgley, B. M., “Comparison of Electrokinetics-Based Multidimensional Separations Coupled with Electrospray Ionization-Tandem Mass Spectrometry for Characterization of Human Salivary Proteins”, Anal. Chem. (2007).

Balgley, B. M., Laudeman, T., Yang, L., Song, T., Lee, C. S., “Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy”, Mol. Cell. Proteomics (2007).

Guo, T., Wang, W., Rudnick, P. A., Song, T., Li, J., Zhuang, Z., Weil, R. J., DeVoe, D. L., Lee, C. S., Balgley, B. M., “Proteome Analysis of Microdissected Formalin-Fixed and Paraffin-Embedded Tissue Specimens”, J. Histochem. Cytochem. 55, 763-772 (2007).

Balgley, B. M., Wang, W., DeVoe, D. L., Lee, C. S., “Mass Spectrometry-Based Tissue Proteomics for Cancer Biomarker Discovery”, Personalized Medicine. 4, 45 (2007).

Martin, D. N., Balgley, B. M., Chen, J., Dutta, S., Rudnick, P. A., Cranford, J., Kantartzis, S., DeVoe, D. L., Lee, C. S., Baehrecke, E. H., “Proteomic Analysis of Steroid-Triggered Autophagic Programmed Cell Death in Drosophila”, Cell Death Differ. 14, 916 (2007).

Wang, W., Guo, T., Song, T., Lee, C. S., Balgley, B. M., “ Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS.”, Proteomics 7, 1178 (2007).

Wang, W., Guo, T., Rudnick, P. A., Song, T., Li, J., Zhuang, Z., Zheng, W., DeVoe, D. L., Lee, C. S., Balgley, B. M., “Membrane Proteome Analysis of Microdissected Ovarian Tumor Tissues Using Capillary Isoelectric Focusing/Reversed-Phase Liquid Chromatography-Tandem MS”, Anal. Chem. 79, 1002 (2007).

DeVoe, D. L., Lee, C. S., “Microfluidic Technologies for MALDI-MS in Proteomics”, Electrophoresis 27, 3559 (2006).

An, Y., Cooper, J. W., Balgley, B. M., Lee, C. S., “Selective Enrichment and Ultrasensitive Identification of Trace Peptides in Proteome Analysis Using Transient Capillary Isotachophoresis/Zone Electrophoresis Coupled with Nano-ESI-MS”, Electrophoresis 27, 3599 (2006).

Shi, S.-R., Liu, C., Balgley, B. M., Lee, C. S., Taylor, C. R., “Protein Extraction from Formalin-Fixed, Paraffin-Embedded Tissue Sections: Quality Evaluation by Mass Spectrometry”, J. Histochem. Cytochem. 54, 739 (2006).

Zhu, L., Lee, C. S., DeVoe, D. L., “Integrated Microfluidic UV Absorbance Detector with Attomol-Level Sensitivity for BSA”, Lab. Chip 6, 115 (2006).

Guo, T., Lee, C. S., Wang, W., DeVoe, D. L., Balgley, B. M., “Capillary Separations Enabling Tissue Proteomics-Based Biomarker Discovery”, Electrophoresis (2006).

Guo, T., Rudnick, P. A., Wang, W., Lee, C. S., DeVoe, D. L., Balgley, B. M., “Characterization of the Human Salivary Proteome by Capillary Isoelectric Focusing/Nano-Reversed Phase Liquid Chromatography Coupled with ESI-Tandem MS”, J. Prot. Res. 5, 1469 (2006).

Wang, Y., Rudnick, P. A., Evans, E. L., Zhuang, Z., Li, J., DeVoe, D. L., Lee, C. S., Balgley, B. M., “Proteome Analysis of Microdissected Tumor Tissue Using a Capillary Isoelectric Focusing-Based Multidimensional Separation Platform Coupled with ESI-Tandem MS”, Anal. Chem. 77, 6549 (2005).

Wang, Y., Balgley, B. M., Lee, C. S., “Tissue Proteomics Using Capillary Isoelectric Focusing-Based Multidimensional Separations”, Expert Rev. Proteomics 2, 659 (2005).

Rudnick, P. A., Wang, Y., Evans, E. L., Lee, C. S., Balgley, B. M., “Large Scale Analysis of MASCOT Results Using a Mass Accuracy-Based THreshold (MATH) Effectively Improves Data Interpretation”, J. Prot. Res. 4, 1353 (2005).

Wang, Y., Balgley, B. M., Rudnick, P. A., Lee, C. S., “Effects of Chromatography Conditions on Intact Protein Separations for Top-Down Proteomics”, J. Chromatogr. A 1073, 35 (2005).

Wang, Y., Balgley, B. M., Rudnick, P. A., Evans, E. L., DeVoe, D. L., Lee, C. S., “Integrated Capillary Isoelectric Focusing/Nano-Reversed Phase Liquid Chromatography Coupled with ESI-MS for Characterization of Intact Yeast Proteins”, J. Prot. Res. 4, 36 (2005).

Cooper, J. W., Wang, Y., Lee, C. S., “Recent Advances in Capillary Separations for Proteomics”, Electrophoresis 25, 3913 (2004).